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More recently, this team has also been in the forefront of federating repositories. While a solid foundation within an institution may be essential for the longevity and sustainability of the material, from the point of view of a researcher the location of a dataset is irrelevant. A researcher, or indeed any user, wants to be able to locate, access, reuse and combine datasets independently of where they happen to be managed. The eCrystals Federation is establishing an international partnership of crystallography data repositories implemented using heterogeneous technologies, with the aim of integrating them into a broader framework for the curation and dissemination of crystallographic data.

There is also a recognised need for linking research publications in institutional repositories with the primary scientific datasets on which the research is based, which will in general be held in separate repositories such as the ones described here. A number of projects – for example StORe and CLADDIER – have been investigating the potential for such linkage.

Repositories of workflows

There is a need to curate scientific processes as well as the data. myExperiment uses digital repository systems to curate and share scientific workflows as part of a social networking environment in which researchers can annotate, discuss and execute these workflows. Initially developed as a community resource for Taverna users, the scope of myExperiment has expanded to incorporate users of other workflow systems.

myExperiment is more than a website for sharing these objects – it addresses directly many of the issues around publication in more traditional digital repositories, including object versioning, and – importantly for a repository of published artefacts – author attribution and credit, making use of the trust models implicit in the Web 2.0 world. Workflows are just as much an intellectual creation of someone’s research as a traditional publication. myExperiment is currently being enhanced as a result of further JISC funding, to support additional content types, and provide a richer range of functionality, such as user-defined vocabularies for more effective tagging and discovery, and a mechanism for better expressing relationships between items in the repository, which can be used for (e.g.) provenance capture.

Repositories within workflows

The RepoMMan project developed an environment that allowed users to interact with a repository as part of their natural workflow. The repository is not just viewed as a stand-alone “silo” of information into which researchers explicitly deposit completed research outputs (and then perhaps forget about them), but is rather a tool that supports researchers by providing services for managing digital content throughout their research activities, from initial conception and experimental work through to archiving and publication. This was implemented by using a workflow engine to orchestrate web services supporting common repository-related tasks.

Although RepoMMan was developed in the context of creating and managing documents rather than complex material and research data, this restriction is not essential. Indeed, this pioneering work is being continued in other current projects, notably Hydra , which is developing a Scholar’s Workbench with a repository at its core, and CLIF , which is investigating the repository as an embedded part of an environment supporting the lifecycle of digital content in various forms.

Repositories as virtual research environments

The term Virtual Research Environment (VRE) covers a range of different systems, and this is not the place for a definitive definition. However, as virtually all research deals with data in some form, a repository is likely to be an important component of any such environment.

An example is provided by the eSciDoc system, one of the aims of which was to provide a digital library/archive ensuring permanent access to the variety of research outputs of the Max Planck Society (MPG) . For the present purposes, however, more interesting is its use as a generic framework for building virtual research environments for specific research communities within the MPG .

eSciDoc provides a generic infrastructure and a rich set of services , built around a digital repository, to support the entire lifecycle of a research project, including visualisation, manipulation, processing and publication of the various information objects used by researchers. This framework is used to develop “ solutions ”, which are researcher-centric applications for supporting particular research communities; a number of these have been developed by the library service of the MPG .

eSciDoc is a system with very rich functionality and potential; in consequence, developing these solutions for specific communities requires a significant amount of programming effort. At the other end of the spectrum, the Islandora project is developing a VRE framework based around the Fedora repository system, which like eSciDoc allows distinct environments to be created for individual research groups around a common repository infrastructure. It is however a much more lightweight solution, developed in the form of plug-ins for an open source content management system, and allows new environments to be created in rapid and agile fashion.

A final example illustrates the potential synergies between repositories and wider e-infrastructure technologies, specifically the gLite grid middleware. The gCube system allows the ad hoc creation of ad hoc data-centric virtual research environments that are tailored to the needs of specific resource groups, and built on top of gLite -based grid infrastructures such as EGEE [will add link to Steve Newhouse’s chapter here]. These environments provide virtual repositories that allow pre-existing data resources, diverse in terms of formats and metadata standards, to be combined, manipulated and annotated.

Summary: the value of repositories in research

We have seen how repositories have evolved greatly from their beginnings as a “home” for research papers, both in terms of the material that they hold and the uses to which they are put, and our examples are moreover far from exhaustive. Crucially, repositories are being integrated with broader processes and infrastructures, not only within research groups and institutions, but globally. In particular, the architecture of the web is being exploited to facilitate the exposure and re-use of digital material in repositories. This movement towards a more joined up world may be expected to continue, making use of approaches such as Linked Data , which aims to use the web, and in particular Semantic Web , technologies, to forge connections between related data, leading to a vision of a digital ecosystem in which repositories form a key component.

Questions & Answers

what does nano mean?
Anassong Reply
nano basically means 10^(-9). nanometer is a unit to measure length.
Bharti
do you think it's worthwhile in the long term to study the effects and possibilities of nanotechnology on viral treatment?
Damian Reply
absolutely yes
Daniel
how to know photocatalytic properties of tio2 nanoparticles...what to do now
Akash Reply
it is a goid question and i want to know the answer as well
Maciej
characteristics of micro business
Abigail
for teaching engĺish at school how nano technology help us
Anassong
Do somebody tell me a best nano engineering book for beginners?
s. Reply
what is fullerene does it is used to make bukky balls
Devang Reply
are you nano engineer ?
s.
fullerene is a bucky ball aka Carbon 60 molecule. It was name by the architect Fuller. He design the geodesic dome. it resembles a soccer ball.
Tarell
what is the actual application of fullerenes nowadays?
Damian
That is a great question Damian. best way to answer that question is to Google it. there are hundreds of applications for buck minister fullerenes, from medical to aerospace. you can also find plenty of research papers that will give you great detail on the potential applications of fullerenes.
Tarell
what is the Synthesis, properties,and applications of carbon nano chemistry
Abhijith Reply
Mostly, they use nano carbon for electronics and for materials to be strengthened.
Virgil
is Bucky paper clear?
CYNTHIA
so some one know about replacing silicon atom with phosphorous in semiconductors device?
s. Reply
Yeah, it is a pain to say the least. You basically have to heat the substarte up to around 1000 degrees celcius then pass phosphene gas over top of it, which is explosive and toxic by the way, under very low pressure.
Harper
Do you know which machine is used to that process?
s.
how to fabricate graphene ink ?
SUYASH Reply
for screen printed electrodes ?
SUYASH
What is lattice structure?
s. Reply
of graphene you mean?
Ebrahim
or in general
Ebrahim
in general
s.
Graphene has a hexagonal structure
tahir
On having this app for quite a bit time, Haven't realised there's a chat room in it.
Cied
what is biological synthesis of nanoparticles
Sanket Reply
what's the easiest and fastest way to the synthesize AgNP?
Damian Reply
China
Cied
types of nano material
abeetha Reply
I start with an easy one. carbon nanotubes woven into a long filament like a string
Porter
many many of nanotubes
Porter
what is the k.e before it land
Yasmin
what is the function of carbon nanotubes?
Cesar
I'm interested in nanotube
Uday
what is nanomaterials​ and their applications of sensors.
Ramkumar Reply
what is nano technology
Sravani Reply
what is system testing?
AMJAD
preparation of nanomaterial
Victor Reply
how did you get the value of 2000N.What calculations are needed to arrive at it
Smarajit Reply
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Source:  OpenStax, Research in a connected world. OpenStax CNX. Nov 22, 2009 Download for free at http://cnx.org/content/col10677/1.12
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