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Experiment design

The main information can be obtained using XAFS spectra consist in small changes in the absorption coefficient ( E ), which can be measured directly in a transmission mode or indirectly using a fluorescence mode. Therefore, a good signal to noise ratio is required (better than 10 3 ). In order to obtain this signal to noise ratio, an intense beam is required (on the order 10 10 photons/second or better), with the energy bandwidth of 1 eV or less, and the capability of scanning the energy of the incident beam over a range of about 1 KeV above the edge in a time range of seconds or few minutes. As a result, synchrotron radiation is preferred further than other kind of X-ray sources previously mentioned.

Beamline setup

Despite the setup of a synchrotron beamline is mostly done by the assistance of specialist beamline scientists, nevertheless, it is useful to understand the system behind the measurement. The main components of a XAFS beamline, shown in [link] , are as follows:

  • A harmonic rejection mirror to reduce the harmonic content of the X-ray beam.
  • A monochromator to choose the X-ray energy.
  • A series of slits which defines the X-ray profile.
  • A sample positioning stage.
  • The detectors, which can be a single ionization detector or a group of detectors to measure the X-ray intensity.
Schematic of the basic components of a XAFS beamline.

Slits are used to define the X-ray beam profile and to block unwanted X-rays. Slits can be used to increase the energy resolution of the X-ray incident on the sample at the expense of some loss in X-ray intensity. They are either fixed or adjustable slits. Fixed slits have a pre-cut opening of heights between 0.2 and 1.0 mm and a width of some centimeters. Adjustable slits use metal plates that move independently to define each edge of the X-ray beam.

Monochromator

The monochromator is used to select the X-ray energy incident on the sample. There are two main kinds of X-ray monochromators:

  1. The double-crystal monochromator, which consists of two parallel crystals.
  2. The channel-cut monochromator, which is a single crystal with a slot cut nearly through it.

Most monochromator crystals are made of silicon or germanium and are cut and polished such that a particular atomic plane of the crystal is parallel to the surface of the crystal as Si(111), Si(311), or Ge(111). The energy of X-rays diffracted by the crystal is controlled by rotating the crystals in the white beam.

Harmonic rejection mirrors

The harmonic X-ray intensity needs to be reduced, as these X-rays will adversely affect the XAS measurement. A common method for removing harmonic X-rays is using a harmonic rejection mirror. This mirror is usually made of Si for low energies, Rh for X-ray energies below the Rh absorption edge at 23 keV, or Pt for higher X-ray energies. The mirror is placed at a grazing angle in the beam such that the X-rays with fundamental energy are reflected toward the sample, while the harmonic X-rays are not.

Detectors

Most X-ray absorption measurements use ionization detectors. These contain two parallel plates separated by a gas-filled space that the X-rays travel through. Some of the X-rays ionize the gas particles. A voltage bias applied to the parallel plates separates the gas ions, creating a current. The applied voltage should give a linear detector response for a given change in the incident X-ray intensity. There are also other kinds as fluorescence and electron yield detectors.

Questions & Answers

how does Neisseria cause meningitis
Nyibol Reply
what is microbiologist
Muhammad Reply
what is errata
Muhammad
is the branch of biology that deals with the study of microorganisms.
Ntefuni Reply
What is microbiology
Mercy Reply
studies of microbes
Louisiaste
when we takee the specimen which lumbar,spin,
Ziyad Reply
How bacteria create energy to survive?
Muhamad Reply
Bacteria doesn't produce energy they are dependent upon their substrate in case of lack of nutrients they are able to make spores which helps them to sustain in harsh environments
_Adnan
But not all bacteria make spores, l mean Eukaryotic cells have Mitochondria which acts as powerhouse for them, since bacteria don't have it, what is the substitution for it?
Muhamad
they make spores
Louisiaste
what is sporadic nd endemic, epidemic
Aminu Reply
the significance of food webs for disease transmission
Abreham
food webs brings about an infection as an individual depends on number of diseased foods or carriers dully.
Mark
explain assimilatory nitrate reduction
Esinniobiwa Reply
Assimilatory nitrate reduction is a process that occurs in some microorganisms, such as bacteria and archaea, in which nitrate (NO3-) is reduced to nitrite (NO2-), and then further reduced to ammonia (NH3).
Elkana
This process is called assimilatory nitrate reduction because the nitrogen that is produced is incorporated in the cells of microorganisms where it can be used in the synthesis of amino acids and other nitrogen products
Elkana
Examples of thermophilic organisms
Shu Reply
Give Examples of thermophilic organisms
Shu
advantages of normal Flora to the host
Micheal Reply
Prevent foreign microbes to the host
Abubakar
they provide healthier benefits to their hosts
ayesha
They are friends to host only when Host immune system is strong and become enemies when the host immune system is weakened . very bad relationship!
Mark
what is cell
faisal Reply
cell is the smallest unit of life
Fauziya
cell is the smallest unit of life
Akanni
ok
Innocent
cell is the structural and functional unit of life
Hasan
is the fundamental units of Life
Musa
what are emergency diseases
Micheal Reply
There are nothing like emergency disease but there are some common medical emergency which can occur simultaneously like Bleeding,heart attack,Breathing difficulties,severe pain heart stock.Hope you will get my point .Have a nice day ❣️
_Adnan
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Innocent
I think infection prevention and control is the avoidance of all things we do that gives out break of infections and promotion of health practices that promote life
Lubega
Heyy Lubega hussein where are u from?
_Adnan
en français
Adama
which site have a normal flora
ESTHER Reply
Many sites of the body have it Skin Nasal cavity Oral cavity Gastro intestinal tract
Safaa
skin
Asiina
skin,Oral,Nasal,GIt
Sadik
How can Commensal can Bacteria change into pathogen?
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How can Commensal Bacteria change into pathogen?
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all
Tesfaye
by fussion
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what are the advantages of normal Flora to the host
Micheal
what are the ways of control and prevention of nosocomial infection in the hospital
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what is inflammation
Shelly Reply
part of a tissue or an organ being wounded or bruised.
Wilfred
what term is used to name and classify microorganisms?
Micheal Reply
Binomial nomenclature
adeolu
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Source:  OpenStax, Physical methods in chemistry and nano science. OpenStax CNX. May 05, 2015 Download for free at http://legacy.cnx.org/content/col10699/1.21
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