<< Chapter < Page Chapter >> Page >

Two-dimensional distributions

This figure shows two grids of numbered boxes. Both are titled with two lines of code. The grid on the left, with code (Block, Block), has sixteen boxes, four boxes each numbered 1, 2, 3, and 4, and the numbers are organized in quadrants. The grid on the right, with code (*, block), has sixteen boxes, four boxes each numbered 1, 2, 3, and 4, and the numbers are organized in columns.

When dealing with more than one data structure to perform a computation, you can either separately distribute them or use the ALIGN directive to ensure that corresponding elements of the two data structures are to be allocated together. In the following example, we have a plate array and a scaling factor that must be applied to each column of the plate during the computation:


DIMENSION PLATE(200,200),SCALE(200) !HPF$ DISTRIBUTE PLATE(*,BLOCK)!HPF$ ALIGN SCALE(I) WITH PLATE(J,I)

Or:


DIMENSION PLATE(200,200),SCALE(200) !HPF$ DISTRIBUTE PLATE(*,BLOCK)!HPF$ ALIGN SCALE(:) WITH PLATE(*,:)

In both examples, the PLATE and the SCALE variables are allocated to the same processors as the corresponding columns of PLATE . The * and : syntax communicate the same information. When * is used, that dimension is collapsed, and it doesn't participate in the distribution. When the : is used, it means that dimension follows the corresponding dimension in the variable that has already been distributed.

You could also specify the layout of the SCALE variable and have the PLATE variable "follow" the layout of the SCALE variable:


DIMENSION PLATE(200,200),SCALE(200) !HPF$ DISTRIBUTE SCALE(BLOCK)!HPF$ ALIGN PLATE(J,I) WITH SCALE(I)

You can put simple arithmetic expressions into the ALIGN directive subject to some limitations. Other directives include:

  • PROCESSORS Allows you to create a shape of the processor configuration that can be used to align other data structures.
  • REDISTRIBUTE and REALIGN Allow you to dynamically reshape data structures at runtime as the communication patterns change during the course of the run.
  • TEMPLATE Allows you to create an array that uses no space. Instead of distributing one data structure and aligning all the other data structures, some users will create and distribute a template and then align all of the real data structures to that template.

The use of directives can range from very simple to very complex. In some situations, you distribute the one large shared structure, align a few related structures and you are done. In other situations, programmers attempt to optimize communications based on the topology of the interconnection network (hypercube, multi-stage interconnection network, mesh, or toroid) using very detailed directives. They also might carefully redistribute the data at the various phases of the computation.

Hopefully your application will yield good performance without too much effort.

Hpf control structures

While the HPF designers were in the midst of defining a new language, they set about improving on what they saw as limitations in FORTRAN 90. Interestingly, these modifications are what is being considered as part of the new FORTRAN 95 standard.

The FORALL statement allows the user to express simple iterative operations that apply to the entire array without resorting to a do-loop (remember, do-loops force order). For example:


FORALL (I=1:100, J=1:100) A(I,J) = I + J

This can be expressed in native FORTRAN 90 but it is rather ugly, counterintuitive, and prone to error.

Questions & Answers

how does Neisseria cause meningitis
Nyibol Reply
what is microbiologist
Muhammad Reply
what is errata
Muhammad
is the branch of biology that deals with the study of microorganisms.
Ntefuni Reply
What is microbiology
Mercy Reply
studies of microbes
Louisiaste
when we takee the specimen which lumbar,spin,
Ziyad Reply
How bacteria create energy to survive?
Muhamad Reply
Bacteria doesn't produce energy they are dependent upon their substrate in case of lack of nutrients they are able to make spores which helps them to sustain in harsh environments
_Adnan
But not all bacteria make spores, l mean Eukaryotic cells have Mitochondria which acts as powerhouse for them, since bacteria don't have it, what is the substitution for it?
Muhamad
they make spores
Louisiaste
what is sporadic nd endemic, epidemic
Aminu Reply
the significance of food webs for disease transmission
Abreham
food webs brings about an infection as an individual depends on number of diseased foods or carriers dully.
Mark
explain assimilatory nitrate reduction
Esinniobiwa Reply
Assimilatory nitrate reduction is a process that occurs in some microorganisms, such as bacteria and archaea, in which nitrate (NO3-) is reduced to nitrite (NO2-), and then further reduced to ammonia (NH3).
Elkana
This process is called assimilatory nitrate reduction because the nitrogen that is produced is incorporated in the cells of microorganisms where it can be used in the synthesis of amino acids and other nitrogen products
Elkana
Examples of thermophilic organisms
Shu Reply
Give Examples of thermophilic organisms
Shu
advantages of normal Flora to the host
Micheal Reply
Prevent foreign microbes to the host
Abubakar
they provide healthier benefits to their hosts
ayesha
They are friends to host only when Host immune system is strong and become enemies when the host immune system is weakened . very bad relationship!
Mark
what is cell
faisal Reply
cell is the smallest unit of life
Fauziya
cell is the smallest unit of life
Akanni
ok
Innocent
cell is the structural and functional unit of life
Hasan
is the fundamental units of Life
Musa
what are emergency diseases
Micheal Reply
There are nothing like emergency disease but there are some common medical emergency which can occur simultaneously like Bleeding,heart attack,Breathing difficulties,severe pain heart stock.Hope you will get my point .Have a nice day ❣️
_Adnan
define infection ,prevention and control
Innocent
I think infection prevention and control is the avoidance of all things we do that gives out break of infections and promotion of health practices that promote life
Lubega
Heyy Lubega hussein where are u from?
_Adnan
en français
Adama
which site have a normal flora
ESTHER Reply
Many sites of the body have it Skin Nasal cavity Oral cavity Gastro intestinal tract
Safaa
skin
Asiina
skin,Oral,Nasal,GIt
Sadik
How can Commensal can Bacteria change into pathogen?
Sadik
How can Commensal Bacteria change into pathogen?
Sadik
all
Tesfaye
by fussion
Asiina
what are the advantages of normal Flora to the host
Micheal
what are the ways of control and prevention of nosocomial infection in the hospital
Micheal
what is inflammation
Shelly Reply
part of a tissue or an organ being wounded or bruised.
Wilfred
what term is used to name and classify microorganisms?
Micheal Reply
Binomial nomenclature
adeolu
Got questions? Join the online conversation and get instant answers!
Jobilize.com Reply

Get Jobilize Job Search Mobile App in your pocket Now!

Get it on Google Play Download on the App Store Now




Source:  OpenStax, High performance computing. OpenStax CNX. Aug 25, 2010 Download for free at http://cnx.org/content/col11136/1.5
Google Play and the Google Play logo are trademarks of Google Inc.

Notification Switch

Would you like to follow the 'High performance computing' conversation and receive update notifications?

Ask