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Causes of mutations

Mistakes in the process of DNA replication can cause spontaneous mutation s to occur. The error rate of DNA polymerase is one incorrect base per billion base pairs replicated. Exposure to mutagen s can cause induced mutation s , which are various types of chemical agents or radiation ( [link] ). Exposure to a mutagen can increase the rate of mutation more than 1000-fold. Mutagens are often also carcinogen s , agents that cause cancer. However, whereas nearly all carcinogens are mutagenic, not all mutagens are necessarily carcinogens.

Chemical mutagens

Various types of chemical mutagens interact directly with DNA either by acting as nucleoside analogs or by modifying nucleotide bases. Chemicals called nucleoside analog s are structurally similar to normal nucleotide bases and can be incorporated into DNA during replication ( [link] ). These base analogs induce mutations because they often have different base-pairing rules than the bases they replace. Other chemical mutagens can modify normal DNA bases, resulting in different base-pairing rules. For example, nitrous acid deaminates cytosine, converting it to uracil. Uracil then pairs with adenine in a subsequent round of replication, resulting in the conversion of a GC base pair to an AT base pair. Nitrous acid also deaminates adenine to hypoxanthine, which base pairs with cytosine instead of thymine, resulting in the conversion of a TA base pair to a CG base pair.

Chemical mutagens known as intercalating agent s work differently. These molecules slide between the stacked nitrogenous bases of the DNA double helix, distorting the molecule and creating atypical spacing between nucleotide base pairs ( [link] ). As a result, during DNA replication, DNA polymerase may either skip replicating several nucleotides (creating a deletion ) or insert extra nucleotides (creating an insertion ). Either outcome may lead to a frameshift mutation . Combustion products like polycyclic aromatic hydrocarbons are particularly dangerous intercalating agents that can lead to mutation-caused cancers. The intercalating agents ethidium bromide and acridine orange are commonly used in the laboratory to stain DNA for visualization and are potential mutagens.

Diagram showing analogs of normal nitrogenous bases. Adenine nucleoside has a double ring of carbon and nitrogen with an NH2 group attached at one of the carbons. The analog 2-aminopurine nucleoside has an H attached to this carbon. Thymine nucleoside has a single carbon nitrogen ring with a CH3 attached to the carbon at the bottom of the ring. The analog 5-bromouracil nucleoside has a Br attached to this carbon. Cytosine has a single carbon and nitrogen ring with an NH2 at one of the carbons. Nitrous acid (NHO2) replaces the NH2 with a double bonded O. This converts the cytosine to a uracil with now binds with adenine instead of guanine.
(a) 2-aminopurine nucleoside (2AP) structurally is a nucleoside analog to adenine nucleoside, whereas 5-bromouracil (5BU) is a nucleoside analog to thymine nucleoside. 2AP base pairs with C, converting an AT base pair to a GC base pair after several rounds of replication. 5BU pairs with G, converting an AT base pair to a GC base pair after several rounds of replication. (b) Nitrous acid is a different type of chemical mutagen that modifies already existing nucleoside bases like C to produce U, which base pairs with A. This chemical modification, as shown here, results in converting a CG base pair to a TA base pair.
Acridine (a molecule with 3 rings and a nitrogen group at either end binds between the two strands of a normal parent DNA. When this is replicated nucleotides can either be deleted or added to produce DNA that is either shorter or longer than the original parent molecule.
Intercalating agents, such as acridine, introduce atypical spacing between base pairs, resulting in DNA polymerase introducing either a deletion or an insertion, leading to a potential frameshift mutation.

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Source:  OpenStax, Microbiology. OpenStax CNX. Nov 01, 2016 Download for free at http://cnx.org/content/col12087/1.4
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