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The P plants that Mendel used in his experiments were each homozygous for the trait he was studying. Diploid organisms that are homozygous    for a gene have two identical alleles, one on each of their homologous chromosomes. The genotype is often written as YY or yy , for which each letter represents one of the two alleles in the genotype. The dominant allele is capitalized and the recessive allele is lower case. The letter used for the gene (seed color in this case) is usually related to the dominant trait (yellow allele, in this case, or “ Y ”). Mendel’s parental pea plants always bred true because both produced gametes carried the same allele. When P plants with contrasting traits were cross-fertilized, all of the offspring were heterozygous    for the contrasting trait, meaning their genotype had different alleles for the gene being examined. For example, the F 1 yellow plants that received a Y allele from their yellow parent and a y allele from their green parent had the genotype Yy .

A graphic with 2 columns, the first with the heading “Phenotype” and the second with the heading “Genotype.” In the phenotype column, one yellow pea plant cross-fertilizes with one green pea plant. The first generation of offspring is 100 percent yellow pea plants. After self-fertilization of these yellow pea offspring, 75 percent of the second generation offspring have yellow peas and 25 percent have green peas. The genotype column shows the first generation offspring as 100 percent Yy, and the second generation as 25 percent YY, 50 percent Yy, and 25 percent yy.
Phenotypes are physical expressions of traits that are transmitted by alleles. Capital letters represent dominant alleles and lowercase letters represent recessive alleles. The phenotypic ratios are the ratios of visible characteristics. The genotypic ratios are the ratios of gene combinations in the offspring, and these are not always distinguishable in the phenotypes.

Law of dominance

Our discussion of homozygous and heterozygous organisms brings us to why the F 1 heterozygous offspring were identical to one of the parents, rather than expressing both alleles. In all seven pea-plant characteristics, one of the two contrasting alleles was dominant, and the other was recessive. Mendel called the dominant allele the expressed unit factor; the recessive allele was referred to as the latent unit factor. We now know that these so-called unit factors are actually genes on homologous chromosomes. For a gene that is expressed in a dominant and recessive pattern, homozygous dominant and heterozygous organisms will look identical (that is, they will have different genotypes but the same phenotype), and the recessive allele will only be observed in homozygous recessive individuals ( [link] ).

Correspondence between Genotype and Phenotype for a Dominant-Recessive Characteristic.
Homozygous Heterozygous Homozygous
Genotype YY Yy yy
Phenotype yellow yellow green

Mendel’s law of dominance    states that in a heterozygote, one trait will conceal the presence of another trait for the same characteristic. For example, when crossing true-breeding violet-flowered plants with true-breeding white-flowered plants, all of the offspring were violet-flowered, even though they all had one allele for violet and one allele for white. Rather than both alleles contributing to a phenotype, the dominant allele will be expressed exclusively. The recessive allele will remain latent, but will be transmitted to offspring in the same manner as that by which the dominant allele is transmitted. The recessive trait will only be expressed by offspring that have two copies of this allele ( [link] ), and these offspring will breed true when self-crossed.

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Source:  OpenStax, Concepts of biology. OpenStax CNX. Feb 29, 2016 Download for free at http://cnx.org/content/col11487/1.9
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