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Appendix 3: prototype development platform

Ruby on rails

Ruby on Rails is a development framework that was created for use with the Ruby language. Its code generation tools and scaffolding make it ideal for fast and flexible prototype development. Developing simple features for a web application follows a very specific process in Ruby on Rails, and, since Rails handles a lot of the steps along the way for you, you save time. For example, forms that allow you to modify data in a database can be auto-generated by Rails. In PHP, by contrast, there are similar tools and frameworks that aid in rapid development, but there are too many to choose from and often time is cannibalized by the hunt for the most appropriate tools.

Ruby on Rails was chosen as our development platform because it offered a rapid prototyping environment, with a structured framework for documentation. This would save us time and provide us with a solid structure for our code base. In addition, because Ruby is a very object-orientated language, it would encourage the use of good software design principles. Ruby on Rails also provides an excellent basis for a Representational State Transfer (REST) API. REST API calls are special cases of regular HTTP URL requests, with an XML data payload defining the contents of the request. By documenting and publishing our REST API any partners that we wished to integrate and collaborate with would be able to make direct use of our database, using tools able to understand RESTful communications protocols.

Zotero

Zotero is an open source tool that automatically extracts bibliographic information from websites and organizes this data with the click of a button. As a Mozilla Firefox plug-in, Zotero is limited to users of that browser that have installed the plug-in. Even so, Zotero offers a quick and easy way to demonstrate some flashy reading tools for the next phase of development. For example, if PReE formatted bibliographic data for documents in a way that was easy for Zotero to parse, we could demonstrate this functionality.

Exist

eXist is an open source database management system built on Java and XML technology. It stores XML data according to the XML data model and features efficient, index-based XQuery processing. Initially, an eXist database seemed like the best choice for storing and indexing XML data for PReE, so we developed an API to assist with interaction of the eXist database with Ruby and released it as open source (eXist XML-RPC API). Since then, we decided to move towards Fedora Commons and Fedora GSearch for storing and indexing our data. The advantages of using Fedora Commons (outlined below) seem to outweigh the advantages of using eXist.

Solr

Solr is an open source enterprise search server based on the Lucene Java search library, with XML/HTTP and JSON APIs, hit highlighting, faceted search, caching, replication, and a web administration interface. It runs in a Java servlet container such as Tomcat. Because of its search capabilities, Solr was integrated into the Ruby on Rails development of PReE. In the current version of PReE, metadata from the Shakespeare Sonnets REKn subset is injected into Solr's index. When a user searches for a document, Solr looks through the metadata for each document in PReE and identifies documents that seem to match the users query. Solr does a very fast job of this, as it is based on the quick Lucene Java search library. Although we were keen to investigate using Fedora GSearch for PReE, this tool has not yet been easily incorporated into the Ruby on Rails development framework.

Fedora commons, fedora gsearch, and rubyfedora

Fedora Commons provides sustainable technologies to create, manage, publish, share and preserve digital content as a basis for intellectual, organizational, scientific, and cultural heritage by bringing two communities together. Fedora Commons has number of advantages over using a Solr server for REKn/PReE. Essentially, documents in Fedora Commons are represented by objects in the system, and these objects have many unique abilities that will be of significant benefit to PReE:

  1. Fedora objects have a special data stream reserved for Dublin Core metadata. When full-text documents from REKn/PReE are fed into Fedora Commons, the document metadata can be attached to the same objects as the full-text.
  2. A Fedora object can have any number of data streams of many different types. If we wished to attach a series of images to a documents object, for example, this is easily accomplished in Fedora. We could also, for example, attach the original RTF file of a sonnet to a documents object. The possibilities here are endless.
  3. Fedora objects data streams can be versioned. This ability would allow us to display different versions of the same document should we wish to implement this feature.

Fedora GSearch allows for searching these objects using Solr. We made contact with the developers of RubyFedora, a code library to make integration between Ruby on Rails and Fedora Commons much easier. RubyFedora would assist in incorporating Fedora Commons into PReE, but progress was cut short when it was realized that the library had not yet included the Fedora GSearch tool. Including the feature to search for documents inside a Fedora Commons repository would take a lot of time if we were forced to code the interaction with Fedora Commons and Fedora GSearch ourselves. Until such times as the Fedora GSearch tool has been built into the RubyFedora library, Fedora Commons would not be used as a replacement for Solr as a document index for PReE.

Questions & Answers

Introduction about quantum dots in nanotechnology
Praveena Reply
what does nano mean?
Anassong Reply
nano basically means 10^(-9). nanometer is a unit to measure length.
Bharti
do you think it's worthwhile in the long term to study the effects and possibilities of nanotechnology on viral treatment?
Damian Reply
absolutely yes
Daniel
how to know photocatalytic properties of tio2 nanoparticles...what to do now
Akash Reply
it is a goid question and i want to know the answer as well
Maciej
characteristics of micro business
Abigail
for teaching engĺish at school how nano technology help us
Anassong
Do somebody tell me a best nano engineering book for beginners?
s. Reply
there is no specific books for beginners but there is book called principle of nanotechnology
NANO
what is fullerene does it is used to make bukky balls
Devang Reply
are you nano engineer ?
s.
fullerene is a bucky ball aka Carbon 60 molecule. It was name by the architect Fuller. He design the geodesic dome. it resembles a soccer ball.
Tarell
what is the actual application of fullerenes nowadays?
Damian
That is a great question Damian. best way to answer that question is to Google it. there are hundreds of applications for buck minister fullerenes, from medical to aerospace. you can also find plenty of research papers that will give you great detail on the potential applications of fullerenes.
Tarell
what is the Synthesis, properties,and applications of carbon nano chemistry
Abhijith Reply
Mostly, they use nano carbon for electronics and for materials to be strengthened.
Virgil
is Bucky paper clear?
CYNTHIA
carbon nanotubes has various application in fuel cells membrane, current research on cancer drug,and in electronics MEMS and NEMS etc
NANO
so some one know about replacing silicon atom with phosphorous in semiconductors device?
s. Reply
Yeah, it is a pain to say the least. You basically have to heat the substarte up to around 1000 degrees celcius then pass phosphene gas over top of it, which is explosive and toxic by the way, under very low pressure.
Harper
Do you know which machine is used to that process?
s.
how to fabricate graphene ink ?
SUYASH Reply
for screen printed electrodes ?
SUYASH
What is lattice structure?
s. Reply
of graphene you mean?
Ebrahim
or in general
Ebrahim
in general
s.
Graphene has a hexagonal structure
tahir
On having this app for quite a bit time, Haven't realised there's a chat room in it.
Cied
what is biological synthesis of nanoparticles
Sanket Reply
what's the easiest and fastest way to the synthesize AgNP?
Damian Reply
China
Cied
types of nano material
abeetha Reply
I start with an easy one. carbon nanotubes woven into a long filament like a string
Porter
many many of nanotubes
Porter
what is the k.e before it land
Yasmin
what is the function of carbon nanotubes?
Cesar
I'm interested in nanotube
Uday
what is nanomaterials​ and their applications of sensors.
Ramkumar Reply
what is nano technology
Sravani Reply
what is system testing?
AMJAD
how did you get the value of 2000N.What calculations are needed to arrive at it
Smarajit Reply
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Source:  OpenStax, Online humanities scholarship: the shape of things to come. OpenStax CNX. May 08, 2010 Download for free at http://cnx.org/content/col11199/1.1
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